J4_8RJD_002

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|C|196
8RJD|1|K|A|197
8RJD|1|K|A|198
8RJD|1|K|G|199
*
8RJD|1|K|C|215
8RJD|1|K|C|216
8RJD|1|K|C|217
8RJD|1|K|A|218
8RJD|1|K|G|219
8RJD|1|K|C|220
8RJD|1|K|C|221
8RJD|1|K|C|222
*
8RJD|1|K|G|226
8RJD|1|K|A|227
8RJD|1|K|C|228
*
8RJD|1|K|G|240
8RJD|1|K|G|241
8RJD|1|K|U|242
8RJD|1|K|A|243
8RJD|1|K|G|244

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain Y

Ribosomal protein L26