J4_8RJD_006

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8RJD|1|K|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|G|2618
8RJD|1|K|G|2619
*
8RJD|1|K|U|2637
8RJD|1|K|G|2638
8RJD|1|K|U|2639
8RJD|1|K|G|2640
8RJD|1|K|A|2641
8RJD|1|K|A|2642
*
8RJD|1|K|U|2692
8RJD|1|K|G|2693
8RJD|1|K|G|2694
8RJD|1|K|A|2695
8RJD|1|K|A|2696
8RJD|1|K|A|2697
8RJD|1|K|G|2698
*
8RJD|1|K|U|2718
8RJD|1|K|C|2719

Current chains

Chain K

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

Large ribosomal subunit protein eL22

Chain g

60S ribosomal protein L34

Chain k

Large ribosomal subunit protein eL38