J4_8RPY_008

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8RPY|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RPY_008 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1421

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8RPY|1|A|C|1833
8RPY|1|A|U|1834
8RPY|1|A|G|1835
*
8RPY|1|A|C|1905
8RPY|1|A|G|1906
*
8RPY|1|A|C|1924
8RPY|1|A|C|1925
8RPY|1|A|U|1926
8RPY|1|A|A|1927
8RPY|1|A|A|1928
8RPY|1|A|G|1929
8RPY|1|A|G|1930
8RPY|1|A|U|1931
8RPY|1|A|A|1932
8RPY|1|A|G|1933
*
8RPY|1|A|C|1967
8RPY|1|A|G|1968
8RPY|1|A|A|1969
8RPY|1|A|A|1970
8RPY|1|A|U|1971
8RPY|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2