J4_8RPZ_004

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RPZ|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RPZ_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0705

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RPZ|1|A|G|1310
8RPZ|1|A|G|1311
8RPZ|1|A|U|1312
8RPZ|1|A|U|1313
8RPZ|1|A|C|1314
*
8RPZ|1|A|G|1338
8RPZ|1|A|G|1339
8RPZ|1|A|U|1340
8RPZ|1|A|G|1341
8RPZ|1|A|A|1342
8RPZ|1|A|G|1343
*
8RPZ|1|A|C|1404
8RPZ|1|A|U|1405
*
8RPZ|1|A|A|1597
8RPZ|1|A|A|1598
8RPZ|1|A|U|1599
8RPZ|1|A|C|1600
8RPZ|1|A|G|1601
8RPZ|1|A|U|1602
8RPZ|1|A|A|1603
8RPZ|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23

Chain x

Apidaecins type 88