J4_8RQ0_004

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8RQ0|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RQ0_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0705

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RQ0|1|A|G|1310
8RQ0|1|A|G|1311
8RQ0|1|A|U|1312
8RQ0|1|A|U|1313
8RQ0|1|A|C|1314
*
8RQ0|1|A|G|1338
8RQ0|1|A|G|1339
8RQ0|1|A|U|1340
8RQ0|1|A|G|1341
8RQ0|1|A|A|1342
8RQ0|1|A|G|1343
*
8RQ0|1|A|C|1404
8RQ0|1|A|U|1405
*
8RQ0|1|A|A|1597
8RQ0|1|A|A|1598
8RQ0|1|A|U|1599
8RQ0|1|A|C|1600
8RQ0|1|A|G|1601
8RQ0|1|A|U|1602
8RQ0|1|A|A|1603
8RQ0|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23

Chain x

Apidaecins type 88