J4_8RQ0_008

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8RQ0|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RQ0_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1651

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8RQ0|1|A|C|1833
8RQ0|1|A|U|1834
8RQ0|1|A|G|1835
*
8RQ0|1|A|C|1905
8RQ0|1|A|G|1906
*
8RQ0|1|A|C|1924
8RQ0|1|A|C|1925
8RQ0|1|A|U|1926
8RQ0|1|A|A|1927
8RQ0|1|A|A|1928
8RQ0|1|A|G|1929
8RQ0|1|A|G|1930
8RQ0|1|A|U|1931
8RQ0|1|A|A|1932
8RQ0|1|A|G|1933
*
8RQ0|1|A|C|1967
8RQ0|1|A|G|1968
8RQ0|1|A|A|1969
8RQ0|1|A|A|1970
8RQ0|1|A|U|1971
8RQ0|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2