J4_8RRI_003

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|A|G|2492
8RRI|1|A|C|2493
8RRI|1|A|C|2494
8RRI|1|A|U|2495
8RRI|1|A|G|2496
*
8RRI|1|A|C|2508
8RRI|1|A|A|2509
8RRI|1|A|U|2510
8RRI|1|A|C|2511
8RRI|1|A|A|2512
8RRI|1|A|C|2513
*
8RRI|1|A|G|2537
8RRI|1|A|C|2538
8RRI|1|A|A|2539
8RRI|1|A|C|2540
8RRI|1|A|C|2541
8RRI|1|A|G|2542
*
8RRI|1|A|C|2637
8RRI|1|A|U|2638
8RRI|1|A|C|2639
8RRI|1|A|C|2640
8RRI|1|A|A|2641
8RRI|1|A|C|2642

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial