J4_8RRI_005

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CGUUCCAG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

8RRI|1|AA|U|711, 8RRI|1|AA|C|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|AA|C|698
8RRI|1|AA|A|699
8RRI|1|AA|A|700
8RRI|1|AA|G|701
*
8RRI|1|AA|C|708
8RRI|1|AA|G|709
8RRI|1|AA|U|710
8RRI|1|AA|U|711
8RRI|1|AA|C|712
8RRI|1|AA|C|713
8RRI|1|AA|A|714
8RRI|1|AA|G|715
*
8RRI|1|AA|C|800
8RRI|1|AA|A|801
8RRI|1|AA|C|802
*
8RRI|1|AA|G|811
8RRI|1|AA|A|812
8RRI|1|AA|A|813
8RRI|1|AA|A|814
8RRI|1|AA|C|815
8RRI|1|AA|A|816
8RRI|1|AA|G|817

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial