J4_8RRI_006

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAGUUCAC*GACA*UAG*CC

Length

17 nucleotides

Bulged bases

8RRI|1|AA|C|722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|AA|G|717
8RRI|1|AA|A|718
8RRI|1|AA|G|719
8RRI|1|AA|U|720
8RRI|1|AA|U|721
8RRI|1|AA|C|722
8RRI|1|AA|A|723
8RRI|1|AA|C|724
*
8RRI|1|AA|G|750
8RRI|1|AA|A|751
8RRI|1|AA|C|752
8RRI|1|AA|A|753
*
8RRI|1|AA|U|789
8RRI|1|AA|A|790
8RRI|1|AA|G|791
*
8RRI|1|AA|C|797
8RRI|1|AA|C|798

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

Small ribosomal subunit protein mS25