J4_8RRI_007
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 8RRI|1|AA|A|942, 8RRI|1|AA|A|1103, 8RRI|1|AA|C|1106, 8RRI|1|AA|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RRI_007 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.2143
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RRI|1|AA|G|941
8RRI|1|AA|A|942
8RRI|1|AA|G|943
*
8RRI|1|AA|C|1052
8RRI|1|AA|A|1053
8RRI|1|AA|A|1054
8RRI|1|AA|U|1055
8RRI|1|AA|A|1056
8RRI|1|AA|G|1057
*
8RRI|1|AA|C|1098
8RRI|1|AA|C|1099
8RRI|1|AA|C|1100
8RRI|1|AA|U|1101
8RRI|1|AA|A|1102
8RRI|1|AA|A|1103
8RRI|1|AA|A|1104
8RRI|1|AA|C|1105
8RRI|1|AA|C|1106
8RRI|1|AA|U|1107
8RRI|1|AA|C|1108
8RRI|1|AA|A|1109
*
8RRI|1|AA|U|1132
8RRI|1|AA|C|1133
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A2
- Small ribosomal subunit protein mS37
- Chain A3
- Aurora kinase A-interacting protein
- Chain AI
- 28S ribosomal protein S11, mitochondrial
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AQ
- Small ribosomal subunit protein bS21m
- Chain AT
- Small ribosomal subunit protein mS25
Coloring options: