J4_8RRI_008
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUAG*CAU*AAGAUG*CU
- Length
- 15 nucleotides
- Bulged bases
- 8RRI|1|Ax|U|8, 8RRI|1|Ax|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RRI_008 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.1637
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8RRI|1|Ax|A|7
8RRI|1|Ax|U|8
8RRI|1|Ax|A|9
8RRI|1|Ax|G|10
*
8RRI|1|Ax|C|25
8RRI|1|Ax|A|26
8RRI|1|Ax|U|27
*
8RRI|1|Ax|A|43
8RRI|1|Ax|A|44
8RRI|1|Ax|G|45
8RRI|1|Ax|A|46
8RRI|1|Ax|U|48
8RRI|1|Ax|G|49
*
8RRI|1|Ax|C|65
8RRI|1|Ax|U|66
Current chains
- Chain Ax
- P/P-tRNA
Nearby chains
- Chain 8
- 39S ribosomal protein L40, mitochondrial
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
Coloring options: