J4_8RW1_001
3D structure
- PDB id
- 8RW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)C*GAU(7MG)(H2U)(5MC)(5MC)U*(RIA)GC
- Length
- 18 nucleotides
- Bulged bases
- 8RW1|1|1|U|8, 8RW1|1|1|H2U|47, 8RW1|1|1|5MC|48
- QA status
- Modified nucleotides: 1MG, 2MG, M2G, 7MG, H2U, 5MC, RIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RW1|1|1|G|7
8RW1|1|1|U|8
8RW1|1|1|1MG|9
8RW1|1|1|2MG|10
*
8RW1|1|1|C|25
8RW1|1|1|M2G|26
8RW1|1|1|C|27
*
8RW1|1|1|G|43
8RW1|1|1|A|44
8RW1|1|1|U|45
8RW1|1|1|7MG|46
8RW1|1|1|H2U|47
8RW1|1|1|5MC|48
8RW1|1|1|5MC|49
8RW1|1|1|U|50
*
8RW1|1|1|RIA|64
8RW1|1|1|G|65
8RW1|1|1|C|66
Current chains
- Chain 1
- Met-tRNAi
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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