J4_8S8K_002

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

8S8K|1|2|A|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8S8K_002 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.1133

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8S8K|1|2|C|99
8S8K|1|2|A|100
8S8K|1|2|U|101
8S8K|1|2|U|102
8S8K|1|2|A|103
8S8K|1|2|A|104
8S8K|1|2|A|105
8S8K|1|2|U|106
8S8K|1|2|C|107
*
8S8K|1|2|G|306
8S8K|1|2|C|307
8S8K|1|2|C|308
*
8S8K|1|2|G|356
8S8K|1|2|U|357
8S8K|1|2|A|358
8S8K|1|2|A|359
8S8K|1|2|C|360
*
8S8K|1|2|G|382
8S8K|1|2|G|383

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p

Chain X

KLLA0B11231p