J4_8SCB_004

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8SCB|1|5|C|216, 8SCB|1|5|C|217, 8SCB|1|5|A|218, 8SCB|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SCB|1|5|C|196
8SCB|1|5|A|197
8SCB|1|5|A|198
8SCB|1|5|G|199
*
8SCB|1|5|C|215
8SCB|1|5|C|216
8SCB|1|5|C|217
8SCB|1|5|A|218
8SCB|1|5|G|219
8SCB|1|5|C|220
8SCB|1|5|C|221
8SCB|1|5|C|222
*
8SCB|1|5|G|226
8SCB|1|5|A|227
8SCB|1|5|C|228
*
8SCB|1|5|G|240
8SCB|1|5|G|241
8SCB|1|5|U|242
8SCB|1|5|A|243
8SCB|1|5|G|244

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24