J4_8SUP_001

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8SUP|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|98
8SUP|1|2|A|99
8SUP|1|2|U|100
8SUP|1|2|U|101
8SUP|1|2|A|102
8SUP|1|2|A|103
8SUP|1|2|A|104
8SUP|1|2|U|105
8SUP|1|2|C|106
*
8SUP|1|2|G|355
8SUP|1|2|C|356
8SUP|1|2|C|357
*
8SUP|1|2|G|405
8SUP|1|2|U|406
8SUP|1|2|G|407
8SUP|1|2|A|408
8SUP|1|2|C|409
*
8SUP|1|2|G|431
8SUP|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain J

eS8

Chain M

uS17

Chain Y

uS12