J4_8SUP_002

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

8SUP|1|2|A|672, 8SUP|1|2|A|1083, 8SUP|1|2|C|1085, 8SUP|1|2|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|A|671
8SUP|1|2|A|672
8SUP|1|2|G|673
*
8SUP|1|2|C|1032
8SUP|1|2|G|1033
8SUP|1|2|A|1034
8SUP|1|2|A|1035
8SUP|1|2|A|1036
8SUP|1|2|G|1037
*
8SUP|1|2|C|1078
8SUP|1|2|C|1079
8SUP|1|2|A|1080
8SUP|1|2|U|1081
8SUP|1|2|A|1082
8SUP|1|2|A|1083
8SUP|1|2|A|1084
8SUP|1|2|C|1085
8SUP|1|2|G|1086
8SUP|1|2|A|1087
8SUP|1|2|U|1088
8SUP|1|2|G|1089
*
8SUP|1|2|U|1160
8SUP|1|2|U|1161

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain P

Small ribosomal subunit protein uS11

Chain X

uS8

Chain Y

uS12

Chain b

eS26

Chain n

eL41