J4_8SYL_002

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8SYL_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0496

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8SYL|1|A|G|297
8SYL|1|A|G|298
8SYL|1|A|A|299
8SYL|1|A|A|300
8SYL|1|A|G|301
*
8SYL|1|A|C|316
8SYL|1|A|G|317
8SYL|1|A|C|318
8SYL|1|A|G|319
*
8SYL|1|A|C|323
8SYL|1|A|A|324
8SYL|1|A|G|325
*
8SYL|1|A|C|337
8SYL|1|A|G|338
8SYL|1|A|U|339
8SYL|1|A|A|340
8SYL|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24