J4_8SYL_003
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8SYL|1|A|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8SYL_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.2472
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8SYL|1|A|C|601
8SYL|1|A|A|602
8SYL|1|A|A|603
8SYL|1|A|G|604
*
8SYL|1|A|C|624
8SYL|1|A|G|625
8SYL|1|A|A|626
8SYL|1|A|A|627
8SYL|1|A|G|628
*
8SYL|1|A|C|635
8SYL|1|A|G|636
8SYL|1|A|A|637
8SYL|1|A|G|638
*
8SYL|1|A|C|650
8SYL|1|A|G|651
8SYL|1|A|U|652
8SYL|1|A|U|653
8SYL|1|A|A|654
8SYL|1|A|A|655
8SYL|1|A|G|656
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L15
Coloring options: