J4_8T2X_013
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- GUGAC*GCGC*GAUGUCC*GC
- Length
- 18 nucleotides
- Bulged bases
- 8T2X|1|tP|U|8, 8T2X|1|tP|U|47, 8T2X|1|tP|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T2X|1|tP|G|7
8T2X|1|tP|U|8
8T2X|1|tP|G|9
8T2X|1|tP|A|10
8T2X|1|tP|C|11
*
8T2X|1|tP|G|24
8T2X|1|tP|C|25
8T2X|1|tP|G|26
8T2X|1|tP|C|27
*
8T2X|1|tP|G|43
8T2X|1|tP|A|44
8T2X|1|tP|U|45
8T2X|1|tP|G|46
8T2X|1|tP|U|47
8T2X|1|tP|C|48
8T2X|1|tP|C|49
*
8T2X|1|tP|G|65
8T2X|1|tP|C|66
Current chains
- Chain tP
- P site tRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- RPL10 isoform 1
- Chain BZ
- RPS25A isoform 1
- Chain eI
- Eukaryotic translation initiation factor 5A
- Chain tA
- Transfer RNA; tRNA
Coloring options: