J4_8T2Y_003
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8T2Y|1|A1|A|1452, 8T2Y|1|A1|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T2Y_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.0968
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T2Y|1|A1|C|1451
8T2Y|1|A1|A|1452
8T2Y|1|A1|A|1453
8T2Y|1|A1|A|1454
8T2Y|1|A1|U|1455
8T2Y|1|A1|A|1456
8T2Y|1|A1|U|1457
*
8T2Y|1|A1|A|1475
8T2Y|1|A1|G|1476
*
8T2Y|1|A1|U|1877
8T2Y|1|A1|G|1878
8T2Y|1|A1|A|1879
8T2Y|1|A1|U|1880
*
8T2Y|1|A1|A|2352
8T2Y|1|A1|G|2353
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AP
- 60S ribosomal protein L17-A
- Chain AR
- 60S ribosomal protein L19-A
- Chain Ad
- 60S ribosomal protein L31-A
Coloring options: