3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAA(PSU)G
Length
21 nucleotides
Bulged bases
8T2Z|1|A1|PSU|2314
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8T2Z_007 not in the Motif Atlas
Homologous match to J4_8C3A_007
Geometric discrepancy: 0.0732
The information below is about J4_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T2Z|1|A1|C|2192
8T2Z|1|A1|U|2193
8T2Z|1|A1|G|2194
*
8T2Z|1|A1|C|2248
8T2Z|1|A1|G|2249
*
8T2Z|1|A1|C|2267
8T2Z|1|A1|U|2268
8T2Z|1|A1|U|2269
8T2Z|1|A1|A|2270
8T2Z|1|A1|A|2271
8T2Z|1|A1|G|2272
8T2Z|1|A1|G|2273
8T2Z|1|A1|U|2274
8T2Z|1|A1|A|2275
8T2Z|1|A1|G|2276
*
8T2Z|1|A1|U|2310
8T2Z|1|A1|G|2311
8T2Z|1|A1|A|2312
8T2Z|1|A1|A|2313
8T2Z|1|A1|PSU|2314
8T2Z|1|A1|G|2315

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain An
60S ribosomal protein L41-A
Chain B5
Small subunit ribosomal RNA; SSU rRNA
Chain tP
Transfer RNA; tRNA

Coloring options:


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