J4_8T3D_009
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAUUAAA(PSU)C*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8T3D|1|B5|A|359
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T3D_009 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.0864
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|B5|C|99
8T3D|1|B5|A|100
8T3D|1|B5|U|101
8T3D|1|B5|U|102
8T3D|1|B5|A|103
8T3D|1|B5|A|104
8T3D|1|B5|A|105
8T3D|1|B5|PSU|106
8T3D|1|B5|C|107
*
8T3D|1|B5|G|307
8T3D|1|B5|C|308
8T3D|1|B5|C|309
*
8T3D|1|B5|G|357
8T3D|1|B5|U|358
8T3D|1|B5|A|359
8T3D|1|B5|A|360
8T3D|1|B5|C|361
*
8T3D|1|B5|G|383
8T3D|1|B5|G|384
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: