3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8T3E_002 not in the Motif Atlas
Homologous match to J4_8C3A_002
Geometric discrepancy: 0.1317
The information below is about J4_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3E|1|A1|C|185
8T3E|1|A1|U|186
8T3E|1|A1|A|187
8T3E|1|A1|U|188
8T3E|1|A1|G|189
*
8T3E|1|A1|C|205
8T3E|1|A1|G|206
8T3E|1|A1|U|207
8T3E|1|A1|C|208
*
8T3E|1|A1|G|212
8T3E|1|A1|A|213
8T3E|1|A1|G|214
*
8T3E|1|A1|C|226
8T3E|1|A1|G|227
8T3E|1|A1|U|228
8T3E|1|A1|G|229
8T3E|1|A1|U|230
8T3E|1|A1|G|231

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A4
5.8S ribosomal RNA; 5.8S rRNA
Chain AC
RPL4A isoform 1
Chain AY
60S ribosomal protein L26-A

Coloring options:


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