J4_8T3E_005

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

8T3E|1|A1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|A1|G|1674
8T3E|1|A1|G|1675
*
8T3E|1|A1|C|1693
8T3E|1|A1|U|1694
8T3E|1|A1|U|1695
8T3E|1|A1|A|1696
8T3E|1|A1|A|1697
8T3E|1|A1|C|1698
*
8T3E|1|A1|G|1747
8T3E|1|A1|G|1748
8T3E|1|A1|A|1749
8T3E|1|A1|A|1750
8T3E|1|A1|G|1751
8T3E|1|A1|A|1752
8T3E|1|A1|G|1753
*
8T3E|1|A1|U|1772
8T3E|1|A1|C|1773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L22-A

Chain Ag

60S ribosomal protein L34-A

Chain Ak

RPL38 isoform 1