J4_8T4S_003

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGA*UACACUG*CGUGAUGG*CGAGGAA

Length

26 nucleotides

Bulged bases

8T4S|1|2|U|1535, 8T4S|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T4S|1|2|U|1225
8T4S|1|2|G|1226
8T4S|1|2|G|1227
8T4S|1|2|A|1228
*
8T4S|1|2|U|1530
8T4S|1|2|A|1531
8T4S|1|2|C|1532
8T4S|1|2|A|1533
8T4S|1|2|C|1534
8T4S|1|2|U|1535
8T4S|1|2|G|1536
*
8T4S|1|2|C|1597
8T4S|1|2|G|1598
8T4S|1|2|U|1599
8T4S|1|2|G|1600
8T4S|1|2|A|1601
8T4S|1|2|U|1602
8T4S|1|2|G|1603
8T4S|1|2|G|1604
*
8T4S|1|2|C|1635
8T4S|1|2|G|1636
8T4S|1|2|A|1637
8T4S|1|2|G|1638
8T4S|1|2|G|1639
8T4S|1|2|A|1640
8T4S|1|2|A|1641

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19

Chain Z

40S ribosomal protein S25