J4_8T5D_004
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8T5D|1|B|U|653, 8T5D|1|B|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T5D_004 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.3672
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T5D|1|B|C|601
8T5D|1|B|A|602
8T5D|1|B|A|603
8T5D|1|B|G|604
*
8T5D|1|B|C|624
8T5D|1|B|G|625
8T5D|1|B|A|626
8T5D|1|B|A|627
8T5D|1|B|G|628
*
8T5D|1|B|C|635
8T5D|1|B|G|636
8T5D|1|B|A|637
8T5D|1|B|G|638
*
8T5D|1|B|C|650
8T5D|1|B|G|651
8T5D|1|B|U|652
8T5D|1|B|U|653
8T5D|1|B|A|654
8T5D|1|B|A|655
8T5D|1|B|G|656
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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