J4_8T5D_015
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8T5D|1|v|C|576, 8T5D|1|v|A|815, 8T5D|1|v|C|817, 8T5D|1|v|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T5D_015 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0748
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T5D|1|v|G|575
8T5D|1|v|C|576
8T5D|1|v|G|577
*
8T5D|1|v|C|764
8T5D|1|v|G|765
8T5D|1|v|A|766
8T5D|1|v|A|767
8T5D|1|v|A|768
8T5D|1|v|G|769
*
8T5D|1|v|C|810
8T5D|1|v|C|811
8T5D|1|v|G|812
8T5D|1|v|U|813
8T5D|1|v|A|814
8T5D|1|v|A|815
8T5D|1|v|A|816
8T5D|1|v|C|817
8T5D|1|v|G|818
8T5D|1|v|A|819
8T5D|1|v|U|820
8T5D|1|v|G|821
*
8T5D|1|v|C|879
8T5D|1|v|C|880
Current chains
- Chain v
- 16s RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 30S ribosomal protein S8
- Chain k
- 30S ribosomal protein S12
- Chain n
- 30S ribosomal protein S15
- Chain p
- 30S ribosomal protein S17
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