J4_8UD8_002

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD8_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0532

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8UD8|1|1A|C|297
8UD8|1|1A|G|298
8UD8|1|1A|A|299
8UD8|1|1A|A|300
8UD8|1|1A|G|301
*
8UD8|1|1A|C|316
8UD8|1|1A|G|317
8UD8|1|1A|C|318
8UD8|1|1A|C|319
*
8UD8|1|1A|G|323
8UD8|1|1A|A|324
8UD8|1|1A|G|325
*
8UD8|1|1A|C|337
8UD8|1|1A|G|338
8UD8|1|1A|U|339
8UD8|1|1A|A|340
8UD8|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24