J4_8UIY_008

3D structure

PDB id

8UIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUG*CGGGA*UCUCUUAAGGUAG*UGAAUG

Length

27 nucleotides

Bulged bases

8UIY|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIY|1|L5|C|3696
8UIY|1|L5|U|3697
8UIY|1|L5|G|3698
*
8UIY|1|L5|C|3752
8UIY|1|L5|G|3753
8UIY|1|L5|G|3754
8UIY|1|L5|G|3755
8UIY|1|L5|A|3756
*
8UIY|1|L5|U|3768
8UIY|1|L5|C|3769
8UIY|1|L5|U|3770
8UIY|1|L5|C|3771
8UIY|1|L5|U|3772
8UIY|1|L5|U|3773
8UIY|1|L5|A|3774
8UIY|1|L5|A|3775
8UIY|1|L5|G|3776
8UIY|1|L5|G|3777
8UIY|1|L5|U|3778
8UIY|1|L5|A|3779
8UIY|1|L5|G|3780
*
8UIY|1|L5|U|3814
8UIY|1|L5|G|3815
8UIY|1|L5|A|3816
8UIY|1|L5|A|3817
8UIY|1|L5|U|3818
8UIY|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA