J4_8UIZ_009

3D structure

PDB id

8UIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUG*CGGG*CUCUUAAGGUAG*UGAAUG

Length

25 nucleotides

Bulged bases

8UIZ|1|L5|U|3772, 8UIZ|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UIZ|1|L5|C|3696
8UIZ|1|L5|U|3697
8UIZ|1|L5|G|3698
*
8UIZ|1|L5|C|3752
8UIZ|1|L5|G|3753
8UIZ|1|L5|G|3754
8UIZ|1|L5|G|3755
*
8UIZ|1|L5|C|3769
8UIZ|1|L5|U|3770
8UIZ|1|L5|C|3771
8UIZ|1|L5|U|3772
8UIZ|1|L5|U|3773
8UIZ|1|L5|A|3774
8UIZ|1|L5|A|3775
8UIZ|1|L5|G|3776
8UIZ|1|L5|G|3777
8UIZ|1|L5|U|3778
8UIZ|1|L5|A|3779
8UIZ|1|L5|G|3780
*
8UIZ|1|L5|U|3814
8UIZ|1|L5|G|3815
8UIZ|1|L5|A|3816
8UIZ|1|L5|A|3817
8UIZ|1|L5|U|3818
8UIZ|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA