3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
AUCUUGGGAGCGGGCGUCCCCGCCC*GCGUU*AUGGAAUAGG*CAUGAU
Length
46 nucleotides
Bulged bases
8UIZ|1|S2|C|687, 8UIZ|1|S2|U|688, 8UIZ|1|S2|G|697, 8UIZ|1|S2|C|730, 8UIZ|1|S2|U|732, 8UIZ|1|S2|C|733, 8UIZ|1|S2|C|735, 8UIZ|1|S2|C|736, 8UIZ|1|S2|C|738, 8UIZ|1|S2|C|739, 8UIZ|1|S2|U|871, 8UIZ|1|S2|G|873, 8UIZ|1|S2|A|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|S2|A|685
8UIZ|1|S2|U|686
8UIZ|1|S2|C|687
8UIZ|1|S2|U|688
8UIZ|1|S2|U|689
8UIZ|1|S2|G|690
8UIZ|1|S2|G|691
8UIZ|1|S2|G|692
8UIZ|1|S2|A|693
8UIZ|1|S2|G|694
8UIZ|1|S2|C|695
8UIZ|1|S2|G|696
8UIZ|1|S2|G|697
8UIZ|1|S2|G|698
8UIZ|1|S2|C|730
8UIZ|1|S2|G|731
8UIZ|1|S2|U|732
8UIZ|1|S2|C|733
8UIZ|1|S2|C|734
8UIZ|1|S2|C|735
8UIZ|1|S2|C|736
8UIZ|1|S2|G|737
8UIZ|1|S2|C|738
8UIZ|1|S2|C|739
8UIZ|1|S2|C|746
*
8UIZ|1|S2|G|796
8UIZ|1|S2|C|797
8UIZ|1|S2|G|798
8UIZ|1|S2|U|799
8UIZ|1|S2|U|800
*
8UIZ|1|S2|A|865
8UIZ|1|S2|U|866
8UIZ|1|S2|G|867
8UIZ|1|S2|G|868
8UIZ|1|S2|A|869
8UIZ|1|S2|A|870
8UIZ|1|S2|U|871
8UIZ|1|S2|A|872
8UIZ|1|S2|G|873
8UIZ|1|S2|G|874
*
8UIZ|1|S2|C|912
8UIZ|1|S2|A|913
8UIZ|1|S2|U|914
8UIZ|1|S2|G|915
8UIZ|1|S2|A|916
8UIZ|1|S2|U|917

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain LR
60S ribosomal protein L19
Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SH
Small ribosomal subunit protein eS7
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23

Coloring options:

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