J4_8UJ9_002

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8UJ9|1|L5|C|216, 8UJ9|1|L5|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|C|196
8UJ9|1|L5|A|197
8UJ9|1|L5|A|198
8UJ9|1|L5|G|199
*
8UJ9|1|L5|C|215
8UJ9|1|L5|C|216
8UJ9|1|L5|C|217
8UJ9|1|L5|A|218
8UJ9|1|L5|G|219
8UJ9|1|L5|C|220
8UJ9|1|L5|C|221
8UJ9|1|L5|C|222
*
8UJ9|1|L5|G|226
8UJ9|1|L5|A|227
8UJ9|1|L5|C|228
*
8UJ9|1|L5|G|240
8UJ9|1|L5|G|241
8UJ9|1|L5|U|242
8UJ9|1|L5|A|243
8UJ9|1|L5|G|244

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26