J4_8UJ9_003

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8UJ9|1|L5|G|1271, 8UJ9|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|C|981
8UJ9|1|L5|U|982
8UJ9|1|L5|C|983
*
8UJ9|1|L5|G|1070
8UJ9|1|L5|C|1071
8UJ9|1|L5|C|1072
*
8UJ9|1|L5|G|1240
8UJ9|1|L5|C|1241
8UJ9|1|L5|G|1242
8UJ9|1|L5|C|1243
*
8UJ9|1|L5|G|1268
8UJ9|1|L5|G|1269
8UJ9|1|L5|A|1270
8UJ9|1|L5|G|1271
8UJ9|1|L5|C|1272
8UJ9|1|L5|G|1273

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Lb

Large ribosomal subunit protein eL29