J4_8UJ9_004

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8UJ9|1|L5|A|2366, 8UJ9|1|L5|U|2369, 8UJ9|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJ9|1|L5|C|2365
8UJ9|1|L5|A|2366
8UJ9|1|L5|A|2367
8UJ9|1|L5|A|2368
8UJ9|1|L5|U|2369
8UJ9|1|L5|A|2370
8UJ9|1|L5|U|2371
*
8UJ9|1|L5|A|2389
8UJ9|1|L5|G|2390
8UJ9|1|L5|G|2391
*
8UJ9|1|L5|C|2824
8UJ9|1|L5|A|2825
8UJ9|1|L5|U|2826
8UJ9|1|L5|G|2827
8UJ9|1|L5|U|2828
8UJ9|1|L5|U|2829
*
8UJ9|1|L5|A|3856
8UJ9|1|L5|G|3857

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31