J4_8UJB_003

3D structure

PDB id

8UJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8UJB|1|L5|G|1271, 8UJB|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJB|1|L5|C|981
8UJB|1|L5|U|982
8UJB|1|L5|C|983
*
8UJB|1|L5|G|1070
8UJB|1|L5|C|1071
8UJB|1|L5|C|1072
*
8UJB|1|L5|G|1240
8UJB|1|L5|C|1241
8UJB|1|L5|G|1242
8UJB|1|L5|C|1243
*
8UJB|1|L5|G|1268
8UJB|1|L5|G|1269
8UJB|1|L5|A|1270
8UJB|1|L5|G|1271
8UJB|1|L5|C|1272
8UJB|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Lb

Large ribosomal subunit protein eL29