J4_8UJB_005
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8UJB|1|L5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UJB_005 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.0692
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UJB|1|L5|G|2406
8UJB|1|L5|G|2407
8UJB|1|L5|U|2408
8UJB|1|L5|U|2409
8UJB|1|L5|C|2410
*
8UJB|1|L5|G|2434
8UJB|1|L5|G|2435
8UJB|1|L5|U|2436
8UJB|1|L5|C|2437
8UJB|1|L5|A|2438
8UJB|1|L5|G|2439
*
8UJB|1|L5|U|2538
8UJB|1|L5|C|2539
*
8UJB|1|L5|G|2777
8UJB|1|L5|G|2778
8UJB|1|L5|C|2779
8UJB|1|L5|C|2780
8UJB|1|L5|G|2781
8UJB|1|L5|U|2782
8UJB|1|L5|A|2783
8UJB|1|L5|C|2784
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CA
- Proliferation-associated protein 2G4
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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