J4_8UJB_013
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8UJB|1|S2|A|672, 8UJB|1|S2|A|1083, 8UJB|1|S2|C|1085, 8UJB|1|S2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UJB_013 not in the Motif Atlas
- Homologous match to J4_8CRE_022
- Geometric discrepancy: 0.0911
- The information below is about J4_8CRE_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UJB|1|S2|A|671
8UJB|1|S2|A|672
8UJB|1|S2|G|673
*
8UJB|1|S2|C|1032
8UJB|1|S2|G|1033
8UJB|1|S2|A|1034
8UJB|1|S2|A|1035
8UJB|1|S2|A|1036
8UJB|1|S2|G|1037
*
8UJB|1|S2|C|1078
8UJB|1|S2|C|1079
8UJB|1|S2|A|1080
8UJB|1|S2|U|1081
8UJB|1|S2|A|1082
8UJB|1|S2|A|1083
8UJB|1|S2|A|1084
8UJB|1|S2|C|1085
8UJB|1|S2|G|1086
8UJB|1|S2|A|1087
8UJB|1|S2|U|1088
8UJB|1|S2|G|1089
*
8UJB|1|S2|U|1160
8UJB|1|S2|U|1161
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- Small ribosomal subunit protein uS11
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
Coloring options: