J4_8UJB_014
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- AUCUUGGGAGCGGGCGUCCCCGCCC*GCGUU*AUGGAAUAGG*CAUGAU
- Length
- 46 nucleotides
- Bulged bases
- 8UJB|1|S2|C|687, 8UJB|1|S2|U|688, 8UJB|1|S2|G|691, 8UJB|1|S2|G|697, 8UJB|1|S2|G|698, 8UJB|1|S2|C|730, 8UJB|1|S2|G|731, 8UJB|1|S2|U|732, 8UJB|1|S2|C|733, 8UJB|1|S2|C|735, 8UJB|1|S2|C|739, 8UJB|1|S2|G|798, 8UJB|1|S2|U|871, 8UJB|1|S2|G|873, 8UJB|1|S2|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UJB|1|S2|A|685
8UJB|1|S2|U|686
8UJB|1|S2|C|687
8UJB|1|S2|U|688
8UJB|1|S2|U|689
8UJB|1|S2|G|690
8UJB|1|S2|G|691
8UJB|1|S2|G|692
8UJB|1|S2|A|693
8UJB|1|S2|G|694
8UJB|1|S2|C|695
8UJB|1|S2|G|696
8UJB|1|S2|G|697
8UJB|1|S2|G|698
8UJB|1|S2|C|730
8UJB|1|S2|G|731
8UJB|1|S2|U|732
8UJB|1|S2|C|733
8UJB|1|S2|C|734
8UJB|1|S2|C|735
8UJB|1|S2|C|736
8UJB|1|S2|G|737
8UJB|1|S2|C|738
8UJB|1|S2|C|739
8UJB|1|S2|C|746
*
8UJB|1|S2|G|796
8UJB|1|S2|C|797
8UJB|1|S2|G|798
8UJB|1|S2|U|799
8UJB|1|S2|U|800
*
8UJB|1|S2|A|865
8UJB|1|S2|U|866
8UJB|1|S2|G|867
8UJB|1|S2|G|868
8UJB|1|S2|A|869
8UJB|1|S2|A|870
8UJB|1|S2|U|871
8UJB|1|S2|A|872
8UJB|1|S2|G|873
8UJB|1|S2|G|874
*
8UJB|1|S2|C|912
8UJB|1|S2|A|913
8UJB|1|S2|U|914
8UJB|1|S2|G|915
8UJB|1|S2|A|916
8UJB|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: