J4_8UJC_008

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8UJC|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UJC_008 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1512

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8UJC|1|L5|C|3696
8UJC|1|L5|U|3697
8UJC|1|L5|G|3698
*
8UJC|1|L5|C|3752
8UJC|1|L5|G|3753
*
8UJC|1|L5|C|3771
8UJC|1|L5|U|3772
8UJC|1|L5|U|3773
8UJC|1|L5|A|3774
8UJC|1|L5|A|3775
8UJC|1|L5|G|3776
8UJC|1|L5|G|3777
8UJC|1|L5|U|3778
8UJC|1|L5|A|3779
8UJC|1|L5|G|3780
*
8UJC|1|L5|U|3814
8UJC|1|L5|G|3815
8UJC|1|L5|A|3816
8UJC|1|L5|A|3817
8UJC|1|L5|U|3818
8UJC|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8