J4_8UJD_002

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8UJD|1|L5|A|218, 8UJD|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|C|196
8UJD|1|L5|A|197
8UJD|1|L5|A|198
8UJD|1|L5|G|199
*
8UJD|1|L5|C|215
8UJD|1|L5|C|216
8UJD|1|L5|C|217
8UJD|1|L5|A|218
8UJD|1|L5|G|219
8UJD|1|L5|C|220
8UJD|1|L5|C|221
8UJD|1|L5|C|222
*
8UJD|1|L5|G|226
8UJD|1|L5|A|227
8UJD|1|L5|C|228
*
8UJD|1|L5|G|240
8UJD|1|L5|G|241
8UJD|1|L5|U|242
8UJD|1|L5|A|243
8UJD|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26