3D structure

PDB id
8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human 60S ribosome with eIF6
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GUAA*UC*GUG*CGCC
Length
13 nucleotides
Bulged bases
8UJD|1|L5|U|4677
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJD|1|L5|G|4587
8UJD|1|L5|U|4588
8UJD|1|L5|A|4589
8UJD|1|L5|A|4590
*
8UJD|1|L5|U|4620
8UJD|1|L5|C|4621
*
8UJD|1|L5|G|4676
8UJD|1|L5|U|4677
8UJD|1|L5|G|4678
*
8UJD|1|L5|C|4712
8UJD|1|L5|G|4713
8UJD|1|L5|C|4714
8UJD|1|L5|C|4715

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LO
60S ribosomal protein L13a
Chain LV
60S ribosomal protein L23

Coloring options:

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