J4_8UJJ_003

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8UJJ|1|L5|A|218, 8UJJ|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJJ|1|L5|C|196
8UJJ|1|L5|A|197
8UJJ|1|L5|A|198
8UJJ|1|L5|G|199
*
8UJJ|1|L5|C|215
8UJJ|1|L5|C|216
8UJJ|1|L5|C|217
8UJJ|1|L5|A|218
8UJJ|1|L5|G|219
8UJJ|1|L5|C|220
8UJJ|1|L5|C|221
8UJJ|1|L5|C|222
*
8UJJ|1|L5|G|226
8UJJ|1|L5|A|227
8UJJ|1|L5|C|228
*
8UJJ|1|L5|G|240
8UJJ|1|L5|G|241
8UJJ|1|L5|U|242
8UJJ|1|L5|A|243
8UJJ|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26