J4_8UJJ_009
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8UJJ|1|L5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UJJ_009 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2164
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UJJ|1|L5|C|3696
8UJJ|1|L5|U|3697
8UJJ|1|L5|G|3698
*
8UJJ|1|L5|C|3752
8UJJ|1|L5|G|3753
*
8UJJ|1|L5|C|3771
8UJJ|1|L5|U|3772
8UJJ|1|L5|U|3773
8UJJ|1|L5|A|3774
8UJJ|1|L5|A|3775
8UJJ|1|L5|G|3776
8UJJ|1|L5|G|3777
8UJJ|1|L5|U|3778
8UJJ|1|L5|A|3779
8UJJ|1|L5|G|3780
*
8UJJ|1|L5|U|3814
8UJJ|1|L5|G|3815
8UJJ|1|L5|A|3816
8UJJ|1|L5|A|3817
8UJJ|1|L5|U|3818
8UJJ|1|L5|G|3819
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Pt
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: