J4_8UJK_003

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8UJK|1|L5|C|216, 8UJK|1|L5|C|217, 8UJK|1|L5|A|218, 8UJK|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|C|196
8UJK|1|L5|A|197
8UJK|1|L5|A|198
8UJK|1|L5|G|199
*
8UJK|1|L5|C|215
8UJK|1|L5|C|216
8UJK|1|L5|C|217
8UJK|1|L5|A|218
8UJK|1|L5|G|219
8UJK|1|L5|C|220
8UJK|1|L5|C|221
8UJK|1|L5|C|222
*
8UJK|1|L5|G|226
8UJK|1|L5|A|227
8UJK|1|L5|C|228
*
8UJK|1|L5|G|240
8UJK|1|L5|G|241
8UJK|1|L5|U|242
8UJK|1|L5|A|243
8UJK|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26