3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
GG*UGUGAA*UGGAAAG*UC
Length
17 nucleotides
Bulged bases
8UJK|1|L5|A|2696
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJK|1|L5|G|2618
8UJK|1|L5|G|2619
*
8UJK|1|L5|U|2637
8UJK|1|L5|G|2638
8UJK|1|L5|U|2639
8UJK|1|L5|G|2640
8UJK|1|L5|A|2641
8UJK|1|L5|A|2642
*
8UJK|1|L5|U|2692
8UJK|1|L5|G|2693
8UJK|1|L5|G|2694
8UJK|1|L5|A|2695
8UJK|1|L5|A|2696
8UJK|1|L5|A|2697
8UJK|1|L5|G|2698
*
8UJK|1|L5|U|2718
8UJK|1|L5|C|2719

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain LU
Heparin-binding protein HBp15
Chain Lg
60S ribosomal protein L34
Chain Lk
60S ribosomal protein L38

Coloring options:

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