J4_8UJK_015
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- AUCUUGGGAGCGGGCGUCCCCGCCC*GCGUU*AUGGAAUAGG*CAUGAU
- Length
- 46 nucleotides
- Bulged bases
- 8UJK|1|S2|C|687, 8UJK|1|S2|G|696, 8UJK|1|S2|G|697, 8UJK|1|S2|C|730, 8UJK|1|S2|U|732, 8UJK|1|S2|C|735, 8UJK|1|S2|U|871, 8UJK|1|S2|G|873, 8UJK|1|S2|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UJK|1|S2|A|685
8UJK|1|S2|U|686
8UJK|1|S2|C|687
8UJK|1|S2|U|688
8UJK|1|S2|U|689
8UJK|1|S2|G|690
8UJK|1|S2|G|691
8UJK|1|S2|G|692
8UJK|1|S2|A|693
8UJK|1|S2|G|694
8UJK|1|S2|C|695
8UJK|1|S2|G|696
8UJK|1|S2|G|697
8UJK|1|S2|G|698
8UJK|1|S2|C|730
8UJK|1|S2|G|731
8UJK|1|S2|U|732
8UJK|1|S2|C|733
8UJK|1|S2|C|734
8UJK|1|S2|C|735
8UJK|1|S2|C|736
8UJK|1|S2|G|737
8UJK|1|S2|C|738
8UJK|1|S2|C|739
8UJK|1|S2|C|746
*
8UJK|1|S2|G|796
8UJK|1|S2|C|797
8UJK|1|S2|G|798
8UJK|1|S2|U|799
8UJK|1|S2|U|800
*
8UJK|1|S2|A|865
8UJK|1|S2|U|866
8UJK|1|S2|G|867
8UJK|1|S2|G|868
8UJK|1|S2|A|869
8UJK|1|S2|A|870
8UJK|1|S2|U|871
8UJK|1|S2|A|872
8UJK|1|S2|G|873
8UJK|1|S2|G|874
*
8UJK|1|S2|C|912
8UJK|1|S2|A|913
8UJK|1|S2|U|914
8UJK|1|S2|G|915
8UJK|1|S2|A|916
8UJK|1|S2|U|917
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: