J4_8UQL_007

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQL_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0566

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8UQL|1|a|G|297
8UQL|1|a|G|298
8UQL|1|a|A|299
8UQL|1|a|A|300
8UQL|1|a|G|301
*
8UQL|1|a|C|316
8UQL|1|a|G|317
8UQL|1|a|C|318
8UQL|1|a|G|319
*
8UQL|1|a|C|323
8UQL|1|a|A|324
8UQL|1|a|G|325
*
8UQL|1|a|C|337
8UQL|1|a|G|338
8UQL|1|a|U|339
8UQL|1|a|A|340
8UQL|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4