J4_8UQP_007

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQP_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0566

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8UQP|1|a|G|297
8UQP|1|a|G|298
8UQP|1|a|A|299
8UQP|1|a|A|300
8UQP|1|a|G|301
*
8UQP|1|a|C|316
8UQP|1|a|G|317
8UQP|1|a|C|318
8UQP|1|a|G|319
*
8UQP|1|a|C|323
8UQP|1|a|A|324
8UQP|1|a|G|325
*
8UQP|1|a|C|337
8UQP|1|a|G|338
8UQP|1|a|U|339
8UQP|1|a|A|340
8UQP|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4