J4_8UQP_010

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8UQP|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQP_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0776

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UQP|1|a|G|1310
8UQP|1|a|G|1311
8UQP|1|a|U|1312
8UQP|1|a|U|1313
8UQP|1|a|C|1314
*
8UQP|1|a|G|1338
8UQP|1|a|G|1339
8UQP|1|a|U|1340
8UQP|1|a|G|1341
8UQP|1|a|A|1342
8UQP|1|a|G|1343
*
8UQP|1|a|C|1404
8UQP|1|a|U|1405
*
8UQP|1|a|A|1597
8UQP|1|a|A|1598
8UQP|1|a|U|1599
8UQP|1|a|C|1600
8UQP|1|a|G|1601
8UQP|1|a|U|1602
8UQP|1|a|A|1603
8UQP|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34