3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8URM|1|2|C|576, 8URM|1|2|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8URM|1|2|G|575
8URM|1|2|C|576
8URM|1|2|G|577
*
8URM|1|2|C|764
8URM|1|2|G|765
8URM|1|2|A|766
8URM|1|2|A|767
8URM|1|2|A|768
8URM|1|2|G|769
*
8URM|1|2|C|810
8URM|1|2|C|811
8URM|1|2|G|812
8URM|1|2|U|813
8URM|1|2|A|814
8URM|1|2|A|815
8URM|1|2|A|816
8URM|1|2|C|817
8URM|1|2|G|818
8URM|1|2|A|819
8URM|1|2|U|820
8URM|1|2|G|821
*
8URM|1|2|C|879
8URM|1|2|C|880

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain m
Small ribosomal subunit protein uS8
Chain q
Small ribosomal subunit protein uS12
Chain t
Small ribosomal subunit protein uS15
Chain v
Small ribosomal subunit protein uS17
Chain z
30S ribosomal protein S21

Coloring options:

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